Co-Regulated Genes and Gene Clusters
نویسندگان
چکیده
منابع مشابه
Mining gene expression data for positive and negative co-regulated gene clusters
MOTIVATION Analysis of gene expression data can provide insights into the positive and negative co-regulation of genes. However, existing methods such as association rule mining are computationally expensive and the quality and quantities of the rules are sensitive to the support and confidence values. In this paper, we introduce the concept of positive and negative co-regulated gene cluster (P...
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Publicly available database of co-expressed gene sets would be a valuable tool for a wide variety of experimental designs, including targeting of genes for functional identification or for regulatory investigation. Here, we report the construction of an Arabidopsis thaliana trans-factor and cis-element prediction database (ATTED-II) that provides co-regulated gene relationships based on co-expr...
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This paper presents an expression pattern based biclustering technique for grouping both positively and negatively regulated genes together as co-regulated genes from microarray expression data. Most interesting variants of this problem are NP-complete requiring either large computational effort or the use of lossy heuristics to short circuit the calculation. Our approach deterministically find...
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ژورنال
عنوان ژورنال: Genes
سال: 2021
ISSN: 2073-4425
DOI: 10.3390/genes12060907